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I now that the new version of Ionic has simple solution of publishing into App Store via "Release and Publish" build but JQM and Ionic 1 doesn't have such option, and my question is how can I publish such applications

You can do this
1. Gather release build
2. Install ios-uploader https://github.com/simonnilsson/ios-uploader
3. Generate App Specific passwrod
3.1 Sign in to appleid.apple.com.
3.2 In the Sign-In and Security section, select App-Specific Passwords.
3.3 Select Generate an app-specific password or select the Add button +, then follow the steps on your screen.
4. execute command ios-uploader -u <apple account> -p <app specific password> -f <path/to/app.ipa>